IL_6DZK_012

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UG*CUG

Length

5 nucleotides

Bulged bases

6DZK|1|A|U|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZK_012 not in the Motif Atlas

Geometric match to IL_4V88_469

Geometric discrepancy: 0.333

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6DZK|1|A|U|187
6DZK|1|A|G|188
*
6DZK|1|A|C|199
6DZK|1|A|U|200
6DZK|1|A|G|201

Current chains

Chain A

16S rRNA

Nearby chains

Chain Q

30S ribosomal protein S17