IL_6DZK_040

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACAU*GC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZK_040 not in the Motif Atlas

Geometric match to IL_5J7L_043

Geometric discrepancy: 0.317

The information below is about IL_5J7L_043

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6DZK|1|A|G|975
6DZK|1|A|A|976
6DZK|1|A|C|977
6DZK|1|A|A|978
6DZK|1|A|U|979
*
6DZK|1|A|G|1024
6DZK|1|A|C|1025

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14