IL_6DZK_043
3D structure
- PDB id
- 6DZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGC*GUCAUC
- Length
- 9 nucleotides
- Bulged bases
- 6DZK|1|A|C|1181, 6DZK|1|A|A|1182
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZK_043 not in the Motif Atlas
- Geometric match to IL_3OXE_002
- Geometric discrepancy: 0.3817
- The information below is about IL_3OXE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70784.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
6DZK|1|A|G|1037
6DZK|1|A|G|1038
6DZK|1|A|C|1039
*
6DZK|1|A|G|1179
6DZK|1|A|U|1180
6DZK|1|A|C|1181
6DZK|1|A|A|1182
6DZK|1|A|U|1183
6DZK|1|A|C|1184
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- 30S ribosomal protein S3
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14
- Chain Y
- Ribosome hibernation promoting factor
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