IL_6DZK_053

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6DZK|1|A|C|1383, 6DZK|1|A|A|1487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZK_053 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2532

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6DZK|1|A|C|1382
6DZK|1|A|C|1383
6DZK|1|A|G|1384
*
6DZK|1|A|C|1485
6DZK|1|A|A|1486
6DZK|1|A|A|1487
6DZK|1|A|G|1488

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Conserved domain protein

Chain Y

Ribosome hibernation promoting factor