IL_6DZK_054

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZK_054 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.219

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6DZK|1|A|G|1384
6DZK|1|A|C|1385
6DZK|1|A|C|1386
6DZK|1|A|C|1387
*
6DZK|1|A|G|1481
6DZK|1|A|U|1482
6DZK|1|A|A|1483
6DZK|1|A|A|1484
6DZK|1|A|C|1485

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Conserved domain protein

Chain Y

Ribosome hibernation promoting factor