IL_6DZK_056

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZK_056 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.3956

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6DZK|1|A|C|1390
6DZK|1|A|A|1391
6DZK|1|A|C|1392
*
6DZK|1|A|G|1475
6DZK|1|A|A|1476
6DZK|1|A|A|1477
6DZK|1|A|G|1478

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Conserved domain protein

Chain L

30S ribosomal protein S12

Chain Y

Ribosome hibernation promoting factor