IL_6DZK_066

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGU*GACG

Length

7 nucleotides

Bulged bases

6DZK|1|A|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZK_066 not in the Motif Atlas

Geometric match to IL_7Y2B_001

Geometric discrepancy: 0.1857

The information below is about IL_7Y2B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6DZK|1|A|C|47
6DZK|1|A|G|48
6DZK|1|A|U|49
*
6DZK|1|A|G|396
6DZK|1|A|A|397
6DZK|1|A|C|398
6DZK|1|A|G|399

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16