IL_6DZK_070
3D structure
- PDB id
- 6DZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UACAAAG*UUUCAAAG
- Length
- 15 nucleotides
- Bulged bases
- 6DZK|1|A|U|1266, 6DZK|1|A|U|1267
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZK_070 not in the Motif Atlas
- Homologous match to IL_5J7L_054
- Geometric discrepancy: 0.5277
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6DZK|1|A|U|1228
6DZK|1|A|A|1229
6DZK|1|A|C|1230
6DZK|1|A|A|1231
6DZK|1|A|A|1232
6DZK|1|A|A|1233
6DZK|1|A|G|1234
*
6DZK|1|A|U|1265
6DZK|1|A|U|1266
6DZK|1|A|U|1267
6DZK|1|A|C|1268
6DZK|1|A|A|1269
6DZK|1|A|A|1270
6DZK|1|A|A|1271
6DZK|1|A|G|1272
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
Coloring options: