IL_6DZK_071

3D structure

PDB id

6DZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UAACA*UGGGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZK_071 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.2645

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6DZK|1|A|U|1407
6DZK|1|A|A|1408
6DZK|1|A|A|1409
6DZK|1|A|C|1410
6DZK|1|A|A|1411
*
6DZK|1|A|U|1456
6DZK|1|A|G|1457
6DZK|1|A|G|1458
6DZK|1|A|G|1459
6DZK|1|A|A|1460

Current chains

Chain A

16S rRNA

Nearby chains