IL_6DZP_012

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

6DZP|1|A|G|591, 6DZP|1|A|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_012 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.2218

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

6DZP|1|A|G|569
6DZP|1|A|U|570
6DZP|1|A|A|571
6DZP|1|A|C|572
*
6DZP|1|A|G|583
6DZP|1|A|A|584
6DZP|1|A|G|585
6DZP|1|A|U|586
6DZP|1|A|G|587
6DZP|1|A|A|588
6DZP|1|A|A|589
6DZP|1|A|A|590
6DZP|1|A|G|591
6DZP|1|A|A|592
6DZP|1|A|G|593
6DZP|1|A|U|594
6DZP|1|A|A|595
6DZP|1|A|C|596

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L22

Chain V

50S ribosomal protein L24