IL_6DZP_019

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

6DZP|1|A|G|916, 6DZP|1|A|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_019 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1742

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6DZP|1|A|G|789
6DZP|1|A|A|790
6DZP|1|A|A|791
6DZP|1|A|G|792
6DZP|1|A|C|793
*
6DZP|1|A|G|914
6DZP|1|A|U|915
6DZP|1|A|G|916
6DZP|1|A|A|917
6DZP|1|A|U|918
6DZP|1|A|A|919
6DZP|1|A|G|920
6DZP|1|A|C|921

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15