IL_6DZP_028
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZP_028 not in the Motif Atlas
- Geometric match to IL_5J7L_270
- Geometric discrepancy: 0.1619
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6DZP|1|A|G|971
6DZP|1|A|A|972
6DZP|1|A|G|973
6DZP|1|A|G|974
6DZP|1|A|U|975
6DZP|1|A|A|976
6DZP|1|A|G|977
*
6DZP|1|A|C|1030
6DZP|1|A|G|1031
6DZP|1|A|A|1032
6DZP|1|A|A|1033
6DZP|1|A|U|1034
6DZP|1|A|G|1035
6DZP|1|A|C|1036
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain N
- 50S ribosomal protein L16
- Chain X
- 50S ribosomal protein L27
- Chain a
- 50S ribosomal protein L30
Coloring options: