IL_6DZP_033
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- GGGC*GUUAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZP_033 not in the Motif Atlas
- Geometric match to IL_6JDV_002
- Geometric discrepancy: 0.3545
- The information below is about IL_6JDV_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6DZP|1|A|G|996
6DZP|1|A|G|997
6DZP|1|A|G|998
6DZP|1|A|C|999
*
6DZP|1|A|G|1008
6DZP|1|A|U|1009
6DZP|1|A|U|1010
6DZP|1|A|A|1011
6DZP|1|A|C|1012
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain W
- 50S ribosomal protein L25
Coloring options: