IL_6DZP_036
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- GCUAAG*CGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 6DZP|1|A|A|1275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZP_036 not in the Motif Atlas
- Geometric match to IL_4WF9_104
- Geometric discrepancy: 0.2019
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
6DZP|1|A|G|1115
6DZP|1|A|C|1116
6DZP|1|A|U|1117
6DZP|1|A|A|1118
6DZP|1|A|A|1119
6DZP|1|A|G|1120
*
6DZP|1|A|C|1272
6DZP|1|A|G|1273
6DZP|1|A|A|1274
6DZP|1|A|A|1275
6DZP|1|A|G|1276
6DZP|1|A|C|1277
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- Uncharacterized protein
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain R
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L21
- Chain a
- 50S ribosomal protein L30
Coloring options: