IL_6DZP_043
3D structure
- PDB id
- 6DZP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.42 Å
Loop
- Sequence
- GUUG*CACC
- Length
- 8 nucleotides
- Bulged bases
- 6DZP|1|A|U|1178, 6DZP|1|A|U|1179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6DZP_043 not in the Motif Atlas
- Homologous match to IL_5J7L_285
- Geometric discrepancy: 0.1992
- The information below is about IL_5J7L_285
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_92446.2
- Basepair signature
- cWW-cWW-R-L-L
- Number of instances in this motif group
- 5
Unit IDs
6DZP|1|A|G|1177
6DZP|1|A|U|1178
6DZP|1|A|U|1179
6DZP|1|A|G|1180
*
6DZP|1|A|C|1194
6DZP|1|A|A|1195
6DZP|1|A|C|1196
6DZP|1|A|C|1197
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain I
- 50S ribosomal protein L10
- Chain J
- 50S ribosomal protein L11
- Chain N
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L25
Coloring options: