IL_6DZP_065

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

AG*CAUAUAU

Length

9 nucleotides

Bulged bases

6DZP|1|A|U|1728, 6DZP|1|A|U|1730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_065 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.5528

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6DZP|1|A|A|1702
6DZP|1|A|G|1703
*
6DZP|1|A|C|1726
6DZP|1|A|A|1727
6DZP|1|A|U|1728
6DZP|1|A|A|1729
6DZP|1|A|U|1730
6DZP|1|A|A|1731
6DZP|1|A|U|1732

Current chains

Chain A

23S rRNA

Nearby chains