IL_6DZP_081

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

AGGACC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_081 not in the Motif Atlas

Geometric match to IL_5LR3_002

Geometric discrepancy: 0.3317

The information below is about IL_5LR3_002

Detailed Annotation

Quadruple sheared

Broad Annotation

No text annotation

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6DZP|1|A|A|2073
6DZP|1|A|G|2074
6DZP|1|A|G|2075
6DZP|1|A|A|2076
6DZP|1|A|C|2077
6DZP|1|A|C|2078
*
6DZP|1|A|G|2105
6DZP|1|A|A|2106
6DZP|1|A|G|2107
6DZP|1|A|A|2108
6DZP|1|A|A|2109
6DZP|1|A|U|2110

Current chains

Chain A

23S rRNA

Nearby chains