IL_6DZP_082

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UUAAC*GUGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_082 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2721

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6DZP|1|A|U|2081
6DZP|1|A|U|2082
6DZP|1|A|A|2083
6DZP|1|A|A|2084
6DZP|1|A|C|2085
*
6DZP|1|A|G|2097
6DZP|1|A|U|2098
6DZP|1|A|G|2099
6DZP|1|A|A|2100
6DZP|1|A|A|2101
6DZP|1|A|G|2102

Current chains

Chain A

23S rRNA

Nearby chains