IL_6DZP_093

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GGAGA*UCGUUGUUGAAAUAC

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_093 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.5075

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

6DZP|1|A|G|2347
6DZP|1|A|G|2348
6DZP|1|A|A|2349
6DZP|1|A|G|2350
6DZP|1|A|A|2351
*
6DZP|1|A|U|2383
6DZP|1|A|C|2384
6DZP|1|A|G|2385
6DZP|1|A|U|2386
6DZP|1|A|U|2387
6DZP|1|A|G|2388
6DZP|1|A|U|2389
6DZP|1|A|U|2390
6DZP|1|A|G|2391
6DZP|1|A|A|2392
6DZP|1|A|A|2393
6DZP|1|A|A|2394
6DZP|1|A|U|2395
6DZP|1|A|A|2396
6DZP|1|A|C|2397

Current chains

Chain A

23S rRNA

Nearby chains