IL_6DZP_109

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UUGAG*CAAGACCAG

Length

14 nucleotides

Bulged bases

6DZP|1|A|C|3004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_109 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1852

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6DZP|1|A|U|2860
6DZP|1|A|U|2861
6DZP|1|A|G|2862
6DZP|1|A|A|2863
6DZP|1|A|G|2864
*
6DZP|1|A|C|2998
6DZP|1|A|A|2999
6DZP|1|A|A|3000
6DZP|1|A|G|3001
6DZP|1|A|A|3002
6DZP|1|A|C|3003
6DZP|1|A|C|3004
6DZP|1|A|A|3005
6DZP|1|A|G|3006

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L13