IL_6DZP_114

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GAUAAC*GGAAAC

Length

12 nucleotides

Bulged bases

6DZP|1|A|A|2989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_114 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1332

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6DZP|1|A|G|2961
6DZP|1|A|A|2962
6DZP|1|A|U|2963
6DZP|1|A|A|2964
6DZP|1|A|A|2965
6DZP|1|A|C|2966
*
6DZP|1|A|G|2986
6DZP|1|A|G|2987
6DZP|1|A|A|2988
6DZP|1|A|A|2989
6DZP|1|A|A|2990
6DZP|1|A|C|2991

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36