IL_6DZP_130

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6DZP|1|A|U|1151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_130 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.2113

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_76400.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6DZP|1|A|G|1149
6DZP|1|A|A|1150
6DZP|1|A|U|1151
6DZP|1|A|G|1152
*
6DZP|1|A|C|1239
6DZP|1|A|G|1240
6DZP|1|A|C|1241

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain N

50S ribosomal protein L16

Chain f

50S ribosomal protein L36