IL_6DZP_143

3D structure

PDB id

6DZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GACC*GGAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6DZP_143 not in the Motif Atlas

Homologous match to IL_9DFE_108

Geometric discrepancy: 0.2611

The information below is about IL_9DFE_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34942.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6DZP|1|A|G|3064
6DZP|1|A|A|3065
6DZP|1|A|C|3066
6DZP|1|A|C|3067
*
6DZP|1|A|G|3091
6DZP|1|A|G|3092
6DZP|1|A|A|3093
6DZP|1|A|A|3094
6DZP|1|A|C|3095

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain O

50S ribosomal protein L17

Chain Q

50S ribosomal protein L19