IL_6E8U_001

3D structure

PDB id

6E8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Mango-III (A10U) aptamer bound to TO1-Biotin

Experimental method

X-RAY DIFFRACTION

Resolution

1.55 Å

Loop

Sequence

AAGGAA*UGU

Length

9 nucleotides

Bulged bases

6E8U|1|B|A|10

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_19668.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6E8U|1|B|A|6
6E8U|1|B|A|7
6E8U|1|B|G|8
6E8U|1|B|G|9
6E8U|1|B|A|10
6E8U|1|B|A|11
*
6E8U|1|B|U|30
6E8U|1|B|G|31
6E8U|1|B|U|32

Current chains

Chain B

RNA (37-MER)

Nearby chains