IL_6EK0_023

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUCC*GGC

Length

8 nucleotides

Bulged bases

6EK0|1|L5|G|483

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EK0_023 not in the Motif Atlas

Geometric match to IL_5J7L_363

Geometric discrepancy: 0.1896

The information below is about IL_5J7L_363

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6EK0|1|L5|G|482
6EK0|1|L5|G|483
6EK0|1|L5|U|484
6EK0|1|L5|C|485
6EK0|1|L5|C|486
*
6EK0|1|L5|G|670
6EK0|1|L5|G|671
6EK0|1|L5|C|672

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lr

60S ribosomal protein L28