IL_6EK0_040

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EK0_040 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.221

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

7

Unit IDs

6EK0|1|L5|G|1094
6EK0|1|L5|A|1095
6EK0|1|L5|C|1096
*
6EK0|1|L5|G|1199
6EK0|1|L5|G|1200
6EK0|1|L5|U|1201

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L21