IL_6EK0_041

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCG*CGGC

Length

7 nucleotides

Bulged bases

6EK0|1|L5|G|1266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EK0_041 not in the Motif Atlas

Geometric match to IL_3R1C_011

Geometric discrepancy: 0.2381

The information below is about IL_3R1C_011

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

6EK0|1|L5|G|1244
6EK0|1|L5|C|1245
6EK0|1|L5|G|1246
*
6EK0|1|L5|C|1264
6EK0|1|L5|G|1265
6EK0|1|L5|G|1266
6EK0|1|L5|C|1267

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Lb

60S ribosomal protein L29