IL_6EK0_042

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

G(P4U)G*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EK0_042 not in the Motif Atlas

Homologous match to IL_8CRE_023

Geometric discrepancy: 0.2206

The information below is about IL_8CRE_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6EK0|1|L5|G|1347
6EK0|1|L5|P4U|1348
6EK0|1|L5|G|1349
*
6EK0|1|L5|C|1507
6EK0|1|L5|A|1508
6EK0|1|L5|C|1509

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LN

60S ribosomal protein L15

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a