IL_6EK0_076

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUAGACAGCAGG*CCUGCCGAA

Length

22 nucleotides

Bulged bases

6EK0|1|L5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EK0|1|L5|U|1957
6EK0|1|L5|A|1958
6EK0|1|L5|U|1959
6EK0|1|L5|A|1960
6EK0|1|L5|G|1961
6EK0|1|L5|A|1962
6EK0|1|L5|C|1963
6EK0|1|L5|A|1964
6EK0|1|L5|G|1965
6EK0|1|L5|C|1966
6EK0|1|L5|A|1967
6EK0|1|L5|G|1968
6EK0|1|L5|G|1969
*
6EK0|1|L5|C|2018
6EK0|1|L5|C|2019
6EK0|1|L5|U|2020
6EK0|1|L5|G|2021
6EK0|1|L5|C|2022
6EK0|1|L5|C|2023
6EK0|1|L5|G|2024
6EK0|1|L5|A|2025
6EK0|1|L5|A|2026

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LS

60S ribosomal protein L18a

Chain Lm

Ubiquitin-60S ribosomal protein L40