IL_6EK0_089

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUC*GG(B9B)AG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B9B

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EK0_089 not in the Motif Atlas

Homologous match to IL_8P9A_295

Geometric discrepancy: 0.2081

The information below is about IL_8P9A_295

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

6EK0|1|L5|C|2589
6EK0|1|L5|G|2590
6EK0|1|L5|A|2591
6EK0|1|L5|U|2592
6EK0|1|L5|C|2593
*
6EK0|1|L5|G|2752
6EK0|1|L5|G|2753
6EK0|1|L5|B9B|2754
6EK0|1|L5|A|2755
6EK0|1|L5|G|2756

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LZ

60S ribosomal protein L27

Chain Lg

60S ribosomal protein L34