IL_6EK0_099
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 6EK0|1|L5|U|2880
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EK0_099 not in the Motif Atlas
- Geometric match to IL_4V9F_063
- Geometric discrepancy: 0.1172
- The information below is about IL_4V9F_063
- Detailed Annotation
- tSH-tSH-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_20700.2
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
6EK0|1|L5|C|2867
6EK0|1|L5|G|2868
6EK0|1|L5|U|2869
6EK0|1|L5|A|2870
6EK0|1|L5|A|2871
6EK0|1|L5|C|2872
*
6EK0|1|L5|G|2877
6EK0|1|L5|G|2878
6EK0|1|L5|A|2879
6EK0|1|L5|U|2880
6EK0|1|L5|A|2881
6EK0|1|L5|A|2882
6EK0|1|L5|G|2883
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
- Chain Lp
- 60S ribosomal protein L37a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: