IL_6EK0_109

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

G(PSU)CA(A2M)AGU*AAUGAAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EK0|1|L5|G|3714
6EK0|1|L5|PSU|3715
6EK0|1|L5|C|3716
6EK0|1|L5|A|3717
6EK0|1|L5|A2M|3718
6EK0|1|L5|A|3719
6EK0|1|L5|G|3720
6EK0|1|L5|U|3721
*
6EK0|1|L5|A|3732
6EK0|1|L5|A|3733
6EK0|1|L5|U|3734
6EK0|1|L5|G|3735
6EK0|1|L5|A|3736
6EK0|1|L5|A|3737
6EK0|1|L5|G|3738
6EK0|1|L5|C|3739

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a

Chain S6

Transfer RNA; tRNA