IL_6EK0_121
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGGGGCGAGCCCCGAGGGGCUCUCGCUUCUGGCGCCAA(B8W)C*GCGAC
- Length
- 45 nucleotides
- Bulged bases
- 6EK0|1|L5|G|4104, 6EK0|1|L5|G|4115, 6EK0|1|L5|C|4116, 6EK0|1|L5|U|4117, 6EK0|1|L5|U|4118, 6EK0|1|L5|G|4121
- QA status
- Modified nucleotides: B8W
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6EK0|1|L5|G|4091
6EK0|1|L5|G|4092
6EK0|1|L5|G|4093
6EK0|1|L5|G|4094
6EK0|1|L5|G|4095
6EK0|1|L5|C|4096
6EK0|1|L5|G|4097
6EK0|1|L5|A|4098
6EK0|1|L5|G|4099
6EK0|1|L5|C|4100
6EK0|1|L5|C|4101
6EK0|1|L5|C|4102
6EK0|1|L5|C|4103
6EK0|1|L5|G|4104
6EK0|1|L5|A|4105
6EK0|1|L5|G|4106
6EK0|1|L5|G|4107
6EK0|1|L5|G|4108
6EK0|1|L5|G|4109
6EK0|1|L5|C|4110
6EK0|1|L5|U|4111
6EK0|1|L5|C|4112
6EK0|1|L5|U|4113
6EK0|1|L5|C|4114
6EK0|1|L5|G|4115
6EK0|1|L5|C|4116
6EK0|1|L5|U|4117
6EK0|1|L5|U|4118
6EK0|1|L5|C|4119
6EK0|1|L5|U|4120
6EK0|1|L5|G|4121
6EK0|1|L5|G|4122
6EK0|1|L5|C|4123
6EK0|1|L5|G|4124
6EK0|1|L5|C|4125
6EK0|1|L5|C|4126
6EK0|1|L5|A|4127
6EK0|1|L5|A|4128
6EK0|1|L5|B8W|4129
6EK0|1|L5|C|4130
*
6EK0|1|L5|G|4154
6EK0|1|L5|C|4155
6EK0|1|L5|G|4156
6EK0|1|L5|A|4157
6EK0|1|L5|C|4158
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LX
- 60S ribosomal protein L23a
- Chain LZ
- 60S ribosomal protein L27
- Chain Lc
- 60S ribosomal protein L30
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
- Chain SB
- 40S ribosomal protein S3a
Coloring options: