IL_6EK0_183

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGAUAAC*GCUAAUA(OMC)A

Length

17 nucleotides

Bulged bases

6EK0|1|S2|U|172

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EK0|1|S2|U|144
6EK0|1|S2|G|145
6EK0|1|S2|G|146
6EK0|1|S2|A|147
6EK0|1|S2|U|148
6EK0|1|S2|A|149
6EK0|1|S2|A|150
6EK0|1|S2|C|151
*
6EK0|1|S2|G|167
6EK0|1|S2|C|168
6EK0|1|S2|U|169
6EK0|1|S2|A|170
6EK0|1|S2|A|171
6EK0|1|S2|U|172
6EK0|1|S2|A|173
6EK0|1|S2|OMC|174
6EK0|1|S2|A|175

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24