IL_6EK0_209
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAAAAA(5MU)UA*UACCGCAGC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6EK0|1|S2|G|807
6EK0|1|S2|A|808
6EK0|1|S2|A|809
6EK0|1|S2|A|810
6EK0|1|S2|A|811
6EK0|1|S2|A|812
6EK0|1|S2|A|813
6EK0|1|S2|5MU|814
6EK0|1|S2|U|815
6EK0|1|S2|A|816
*
6EK0|1|S2|U|848
6EK0|1|S2|A|849
6EK0|1|S2|C|850
6EK0|1|S2|C|851
6EK0|1|S2|G|852
6EK0|1|S2|C|853
6EK0|1|S2|A|854
6EK0|1|S2|G|855
6EK0|1|S2|C|856
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SJ
- 40S ribosomal protein S9
- Chain SL
- 40S ribosomal protein S11
- Chain SW
- 40S ribosomal protein S15a
Coloring options: