IL_6EK0_249
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- G(OMC)CC*G(UR3)A(6MZ)C
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, UR3, 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EK0_249 not in the Motif Atlas
- Homologous match to IL_8CRE_467
- Geometric discrepancy: 0.1015
- The information below is about IL_8CRE_467
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25873.3
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6EK0|1|S2|G|1702
6EK0|1|S2|OMC|1703
6EK0|1|S2|C|1704
6EK0|1|S2|C|1705
*
6EK0|1|S2|G|1829
6EK0|1|S2|UR3|1830
6EK0|1|S2|A|1831
6EK0|1|S2|6MZ|1832
6EK0|1|S2|C|1833
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
Coloring options: