IL_6EK0_262

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGCGCCGCUCGUGG*CGGCGCGCCG

Length

25 nucleotides

Bulged bases

6EK0|1|L5|G|186, 6EK0|1|L5|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EK0|1|L5|C|175
6EK0|1|L5|G|176
6EK0|1|L5|G|177
6EK0|1|L5|C|178
6EK0|1|L5|G|179
6EK0|1|L5|C|180
6EK0|1|L5|C|181
6EK0|1|L5|G|182
6EK0|1|L5|C|183
6EK0|1|L5|U|184
6EK0|1|L5|C|185
6EK0|1|L5|G|186
6EK0|1|L5|U|187
6EK0|1|L5|G|188
6EK0|1|L5|G|189
*
6EK0|1|L5|C|252
6EK0|1|L5|G|253
6EK0|1|L5|G|254
6EK0|1|L5|C|255
6EK0|1|L5|G|256
6EK0|1|L5|C|257
6EK0|1|L5|G|258
6EK0|1|L5|C|259
6EK0|1|L5|C|260
6EK0|1|L5|G|261

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4

Chain LL

60S ribosomal protein L13

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37