IL_6EK0_264

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGUCGGCGGCCCGG*UCCCCCGACC

Length

25 nucleotides

Bulged bases

6EK0|1|L5|G|497, 6EK0|1|L5|C|501, 6EK0|1|L5|C|502, 6EK0|1|L5|C|503, 6EK0|1|L5|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EK0|1|L5|G|491
6EK0|1|L5|U|492
6EK0|1|L5|G|493
6EK0|1|L5|U|494
6EK0|1|L5|C|495
6EK0|1|L5|G|496
6EK0|1|L5|G|497
6EK0|1|L5|C|498
6EK0|1|L5|G|499
6EK0|1|L5|G|500
6EK0|1|L5|C|501
6EK0|1|L5|C|502
6EK0|1|L5|C|503
6EK0|1|L5|G|504
6EK0|1|L5|G|505
*
6EK0|1|L5|U|653
6EK0|1|L5|C|654
6EK0|1|L5|C|655
6EK0|1|L5|C|656
6EK0|1|L5|C|657
6EK0|1|L5|C|658
6EK0|1|L5|G|659
6EK0|1|L5|A|660
6EK0|1|L5|C|661
6EK0|1|L5|C|662

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18