IL_6EK0_276

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EK0_276 not in the Motif Atlas

Homologous match to IL_8CRE_065

Geometric discrepancy: 0.0924

The information below is about IL_8CRE_065

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6EK0|1|L5|G|2358
6EK0|1|L5|U|2359
6EK0|1|L5|A|2360
6EK0|1|L5|G|2361
6EK0|1|L5|U|2362
6EK0|1|L5|A2M|2363
6EK0|1|L5|OMG|2364
*
6EK0|1|L5|C|3858
6EK0|1|L5|G|3859
6EK0|1|L5|A|3860
6EK0|1|L5|A|3861
6EK0|1|L5|A|3862
6EK0|1|L5|C|3863

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17