IL_6EK0_279

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGUCGG*CGGCGCCUAGC

Length

18 nucleotides

Bulged bases

6EK0|1|L5|G|2903, 6EK0|1|L5|G|2906, 6EK0|1|L5|G|3590, 6EK0|1|L5|C|3593, 6EK0|1|L5|A|3596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6EK0|1|L5|G|2901
6EK0|1|L5|G|2902
6EK0|1|L5|G|2903
6EK0|1|L5|U|2904
6EK0|1|L5|C|2905
6EK0|1|L5|G|2906
6EK0|1|L5|G|2907
*
6EK0|1|L5|C|3588
6EK0|1|L5|G|3589
6EK0|1|L5|G|3590
6EK0|1|L5|C|3591
6EK0|1|L5|G|3592
6EK0|1|L5|C|3593
6EK0|1|L5|C|3594
6EK0|1|L5|U|3595
6EK0|1|L5|A|3596
6EK0|1|L5|G|3597
6EK0|1|L5|C|3598

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11