IL_6EK0_281

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

6EK0|1|L5|A2M|3785, 6EK0|1|L5|C|3791, 6EK0|1|L5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EK0_281 not in the Motif Atlas

Homologous match to IL_8CRE_095

Geometric discrepancy: 0.0922

The information below is about IL_8CRE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

6EK0|1|L5|C|3781
6EK0|1|L5|5MC|3782
6EK0|1|L5|A|3783
6EK0|1|L5|A|3784
6EK0|1|L5|A2M|3785
6EK0|1|L5|U|3786
6EK0|1|L5|G|3787
6EK0|1|L5|C|3788
6EK0|1|L5|C|3789
6EK0|1|L5|U|3790
6EK0|1|L5|C|3791
6EK0|1|L5|OMG|3792
*
6EK0|1|L5|C|3808
6EK0|1|L5|G|3809
6EK0|1|L5|C|3810
6EK0|1|L5|G|3811

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA