IL_6EK0_285
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GC(PSU)UG*UGA(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EK0_285 not in the Motif Atlas
- Homologous match to IL_8CRE_111
- Geometric discrepancy: 0.4433
- The information below is about IL_8CRE_111
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68909.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
6EK0|1|L5|G|4401
6EK0|1|L5|C|4402
6EK0|1|L5|PSU|4403
6EK0|1|L5|U|4404
6EK0|1|L5|G|4405
*
6EK0|1|L5|U|4439
6EK0|1|L5|G|4440
6EK0|1|L5|A|4441
6EK0|1|L5|PSU|4442
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LI
- 60S ribosomal protein L10-like
- Chain Lb
- 60S ribosomal protein L29
Coloring options: