IL_6EK0_300
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGCGG*CUGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EK0_300 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3839
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6EK0|1|S2|C|877
6EK0|1|S2|G|878
6EK0|1|S2|C|879
6EK0|1|S2|G|880
6EK0|1|S2|G|881
*
6EK0|1|S2|C|905
6EK0|1|S2|U|906
6EK0|1|S2|G|907
6EK0|1|S2|A|908
6EK0|1|S2|G|909
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain SH
- 40S ribosomal protein S7
- Chain SL
- 40S ribosomal protein S11
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