IL_6ELZ_008

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AAC*GU

Length

5 nucleotides

Bulged bases

6ELZ|1|1|A|165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ELZ_008 not in the Motif Atlas

Geometric match to IL_6D3P_004

Geometric discrepancy: 0.2396

The information below is about IL_6D3P_004

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6ELZ|1|1|A|164
6ELZ|1|1|A|165
6ELZ|1|1|C|166
*
6ELZ|1|1|G|256
6ELZ|1|1|U|257

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain h

60S ribosomal protein L35-A

Chain v

Nucleolar protein 16