IL_6ELZ_025

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ELZ_025 not in the Motif Atlas

Homologous match to IL_8C3A_029

Geometric discrepancy: 0.1438

The information below is about IL_8C3A_029

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6ELZ|1|1|C|803
6ELZ|1|1|C|804
6ELZ|1|1|G|805
*
6ELZ|1|1|C|938
6ELZ|1|1|U|939
6ELZ|1|1|G|940

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase