IL_6ELZ_028

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUU*AUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ELZ_028 not in the Motif Atlas

Geometric match to IL_3GM7_004

Geometric discrepancy: 0.1997

The information below is about IL_3GM7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

6ELZ|1|1|G|870
6ELZ|1|1|U|871
6ELZ|1|1|U|872
*
6ELZ|1|1|A|888
6ELZ|1|1|U|889
6ELZ|1|1|C|890

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain I

Nucleolar complex-associated protein 3

Chain l

60S ribosome subunit biogenesis protein NIP7

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase