IL_6ELZ_097

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGUA*UCU

Length

7 nucleotides

Bulged bases

6ELZ|1|1|U|3341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ELZ_097 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2623

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

6ELZ|1|1|A|3339
6ELZ|1|1|G|3340
6ELZ|1|1|U|3341
6ELZ|1|1|A|3342
*
6ELZ|1|1|U|3363
6ELZ|1|1|C|3364
6ELZ|1|1|U|3365

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain u

Ribosome biogenesis protein RLP24

Chain w

27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase