IL_6ELZ_114

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

6ELZ|1|1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ELZ_114 not in the Motif Atlas

Homologous match to IL_8CRE_070

Geometric discrepancy: 0.4873

The information below is about IL_8CRE_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6ELZ|1|1|G|1623
6ELZ|1|1|G|1624
*
6ELZ|1|1|U|1820
6ELZ|1|1|U|1821
6ELZ|1|1|C|1822

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain g

60S ribosomal protein L34-A

Chain m

Ribosome biogenesis protein ERB1

Chain n

Pescadillo homolog