IL_6ELZ_115

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AC*GAU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ELZ_115 not in the Motif Atlas

Geometric match to IL_8P9A_238

Geometric discrepancy: 0.2214

The information below is about IL_8P9A_238

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

6ELZ|1|1|A|2404
6ELZ|1|1|C|2405
*
6ELZ|1|1|G|2816
6ELZ|1|1|A|2817
6ELZ|1|1|U|2818

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain J

rRNA-processing protein EBP2

Chain b

Nucleolar GTP-binding protein 1

Chain r

Ribosome biogenesis protein NSA2