IL_6EM1_063
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUUG*CUUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6EM1_063 not in the Motif Atlas
- Geometric match to IL_4UYK_003
- Geometric discrepancy: 0.15
- The information below is about IL_4UYK_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 29
Unit IDs
6EM1|1|1|C|3235
6EM1|1|1|U|3236
6EM1|1|1|U|3237
6EM1|1|1|G|3238
*
6EM1|1|1|C|3249
6EM1|1|1|U|3250
6EM1|1|1|U|3251
6EM1|1|1|G|3252
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
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